Modelling species responses and other dataĪnalysing species response curves or modelling other data often involves the fitting of standard statistical models to ecological data and includes simple (multiple) regression, Generalized Linear Models (GLM), extended regression (e.g. Generalized Least Squares ), Generalized Additive Models (GAM), and mixed effects models, amongst others. A user guide in the form of a book has recently been released. Package EnvStats is the successor to the S-PLUS module EnvironmentalStats, both by Steven Millard.These packages are general, having wide applicability to the environmetrics field. If you have any comments or suggestions for additions or improvements, then please contact the maintainer or submit an issue or pull request in the GitHub repository linked above.Ī list of available packages and functions is presented below, grouped by analysis type. Complementary information is also available in the Cluster, and SpatioTemporal task views. Those interested in environmetrics should consult the Spatial view. As a testament to the popularity of R for the analysis of environmental and ecological data, a special volume of the Journal of Statistical Software was produced in 2007. A brief overview of the available packages is provided in this Task View, grouped by topic or type of analysis. This functionality is complemented by a plethora of packages available via CRAN, which provide specialist methods such as ordination & cluster analysis techniques. The base version of R ships with a wide range of functions for use within the field of environmetrics. This Task View contains information about using R to analyse ecological and environmental data.
See the CRAN Task View Initiative for more details.
For example, ctv::install.views("Environmetrics", coreOnly = TRUE) installs all the core packages or ctv::update.views("Environmetrics") installs all packages that are not yet installed and up-to-date. The packages from this task view can be installed automatically using the ctv package. CRAN Task View: Analysis of Ecological and Environmental Data. For further details see the Contributing guide.
Suggestions and improvements for this task view are very welcome and can be made through issues or pull requests on GitHub or via e-mail to the maintainer address. CRAN Task View: Analysis of Ecological and Environmental Data CRAN Task View: Analysis of Ecological and Environmental Data Maintainer:
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